Sync'd files are not showing as sync'd

[lostdog]

I am using the Free version currently, and I am trying to sync a local folder across to a network share and at first it was going well, however now it shows that some files are not sync'd, though if I choose to sync both sides together, it's asking for copy confirmation, since the files are really sync'd. It's to the point now that I can do the sync and tell it "Yes to All" just to make sure it syncs up, close the program and then start it up again, and it still shows not sync'd. If it makes any difference, it's a 60.1GB set of 21,260 files and 192 folders.

[lostdog]

I found the problem now. Some of the subfolders in the target directory had names with all lowercase, while the source directory had properly cased names. Such as Source of "ChristmasFamily" where target was "christmasfamily". So when the compare happened, it saw these as different. I changed the case in the target, and then compare worked fine. Now to figure out how the case became improper in the first place.